| # Containers |
|
| # https://www.ncbi.nlm.nih.gov/sra/docs/submitformats/ |
|
| BAM bam |
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| CRAM cram |
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| EMBL embl |
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| FASTA fasta || fa || fsa |
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| FASTA+QUAL fasta && qual |
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| CSFASTA+QUAL csfasta && qual |
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| FASTQ fastq || sanfastq || fq |
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| GFF gff2 || gff3 || gff |
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| GTF gtf |
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| GenBank gb || gbk |
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| HDF5 hdf5 || (bash5 && baxh5) || fast5 |
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| PIR pir |
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| QSeq qseq |
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| SAM sam |
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| SFF sff |
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| SRF srf |
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| SnapGene dna seq |
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| SwissProt dat |
|
| VCF vcf |
|
| Plain txt csv |
|
| # ContainersProt |
|
| # https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3518119/ |
|
| # DO NOT PARSE RAW FILES. TOO MANY COMPETING VENDORS |
|
| ABI/Sciex wiff t2d |
|
| APML apml |
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| ASF asf |
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| Agilent/Bruker d yep baf tdf fid |
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| BlibBuild blib |
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| Bruker/Varian sms xms |
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| Finnigan dat ms |
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| ION-TOF itm ita |
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| JCAMP-DX jdx |
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| MGF mgf |
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| MS2 ms2 |
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| MSF msf |
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| OMSSA omx |
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| PEFF peff |
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| Pickle pkl pickle |
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| Shimadzu qgd lcd spc |
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| Skyline sky skyd |
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| TPP/SPC dta |
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| Tandem tandem |
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| TraML traml |
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| ULVAC-PHI tdc |
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| mzML mzml |
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| mzXML mzxml |
|
| mzData mzdata |
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| pepXML pepxml |
|
| protXML protxml |
|
| Plain csv txt |
|
| # ContainersGames |
|
| # https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3948928/ |
|
| Analyze img || hdr |
|
| #Interfile img || hdr &| h33 |
|
| Dicom dcm |
|
| JPEG jpg jpeg jfif |
|
| JPEG 2000 jp2 j2k jpf jpx jpm mj2 |
|
| Minc mnc |
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| Nifti nii |
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| PNG png |
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| TIFF tiff tif |
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| WebP webp |
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| Other '' |
|
| # Archives |
|
| 7z 7z |
|
| bzip2 bz2 bzip2 |
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| gzip gz gzip |
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| Pickle pkl pickle |
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| RAR rar rev |
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| ZIP zip zipx |
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| None '' |
|