Add file extention mappings

templates/filemap.csv

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+# Containers
+# https://www.ncbi.nlm.nih.gov/sra/docs/submitformats/
+
+BAM		bam
+CRAM		cram
+EMBL		embl
+FASTA		fasta || fa || fsa
+FASTA+QUAL	fasta && qual
+CSFASTA+QUAL	csfasta && qual
+FASTQ		fastq || sanfastq || fq
+GFF		gff2 || gff3 || gff
+GTF		gtf
+GenBank		gb || gbk
+HDF5		hdf5 || (bash5 && baxh5) || fast5
+PIR		pir
+QSeq		qseq
+SAM		sam
+SFF		sff
+SRF		srf
+SnapGene	dna seq
+SwissProt	dat
+VCF		vcf
+Plain		txt csv
+
+
+# ContainersProt
+# https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3518119/
+# DO NOT PARSE RAW FILES. TOO MANY COMPETING VENDORS
+
+ABI/Sciex	wiff t2d
+APML		apml
+ASF		asf
+Agilent/Bruker	d yep baf tdf fid
+BlibBuild	blib
+Bruker/Varian	sms xms
+Finnigan	dat ms
+ION-TOF		itm ita
+JCAMP-DX	jdx
+MGF		mgf
+MS2		ms2
+MSF		msf
+OMSSA		omx
+PEFF		peff
+Pickle		pkl pickle
+Shimadzu	qgd lcd spc
+Skyline		sky skyd
+TPP/SPC		dta
+Tandem		tandem
+TraML		traml
+ULVAC-PHI	tdc
+mzML		mzml
+mzXML		mzxml
+mzData		mzdata
+pepXML		pepxml
+protXML		protxml
+Plain		csv txt
+
+
+# ContainersGames
+# https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3948928/
+
+Analyze		img || hdr
+#Interfile	img || hdr &| h33
+Dicom		dcm
+JPEG		jpg jpeg jfif
+JPEG 2000	jp2 j2k jpf jpx jpm mj2
+Minc		mnc
+Nifti		nii
+PNG		png
+TIFF		tiff tif
+WebP		webp
+Other		''
+
+
+# Archives
+
+7z		7z
+bzip2		bz2 bzip2
+gzip		gz gzip
+Pickle		pkl pickle
+RAR		rar rev
+ZIP		zip zipx
+None		''