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Add more biology regexes

pjc 5 years ago
parent
commit
2447f44c76
1 changed files with 14 additions and 4 deletions
  1. 14
    4
      classes/regex.php

+ 14
- 4
classes/regex.php View File

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-<?
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-//resource_type://username:password@domain:port/path?query_string#anchor
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+<?php
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+// resource_type://username:password@domain:port/path?query_string#anchor
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 define('RESOURCE_REGEX', '(https?|ftps?):\/\/');
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 define('RESOURCE_REGEX', '(https?|ftps?):\/\/');
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 define('IP_REGEX', '(\d{1,3}\.){3}\d{1,3}');
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 define('IP_REGEX', '(\d{1,3}\.){3}\d{1,3}');
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 define('DOMAIN_REGEX', '([a-z0-9\-\_]+\.)*[a-z0-9\-\_]+');
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 define('DOMAIN_REGEX', '([a-z0-9\-\_]+\.)*[a-z0-9\-\_]+');
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 define('PORT_REGEX', ':\d{1,5}');
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 define('PORT_REGEX', ':\d{1,5}');
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 define('URL_REGEX', '('.RESOURCE_REGEX.')('.IP_REGEX.'|'.DOMAIN_REGEX.')('.PORT_REGEX.')?(\/\S*)*');
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 define('URL_REGEX', '('.RESOURCE_REGEX.')('.IP_REGEX.'|'.DOMAIN_REGEX.')('.PORT_REGEX.')?(\/\S*)*');
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 define('USERNAME_REGEX', '/^[a-z0-9_]{2,20}$/iD');
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 define('USERNAME_REGEX', '/^[a-z0-9_]{2,20}$/iD');
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-define('EMAIL_REGEX','[_a-z0-9-]+([.+][_a-z0-9-]+)*@'.DOMAIN_REGEX);
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+define('EMAIL_REGEX', '[_a-z0-9-]+([.+][_a-z0-9-]+)*@'.DOMAIN_REGEX);
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 define('IMAGE_REGEX', URL_REGEX.'\/\S+\.(jpg|jpeg|tif|tiff|png|gif|bmp)(\?\S*)?');
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 define('IMAGE_REGEX', URL_REGEX.'\/\S+\.(jpg|jpeg|tif|tiff|png|gif|bmp)(\?\S*)?');
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 define('VIDEO_REGEX', URL_REGEX.'\/\S+\.(webm)(\?\S*)?');
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 define('VIDEO_REGEX', URL_REGEX.'\/\S+\.(webm)(\?\S*)?');
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 define('CSS_REGEX', URL_REGEX.'\/\S+\.css(\?\S*)?');
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 define('CSS_REGEX', URL_REGEX.'\/\S+\.css(\?\S*)?');
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 define('TORRENT_REGEX', SITELINK_REGEX.'\/torrents\.php\?(.*&)?torrentid=(\d+)'); // torrentid = group 4
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 define('TORRENT_REGEX', SITELINK_REGEX.'\/torrents\.php\?(.*&)?torrentid=(\d+)'); // torrentid = group 4
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 define('TORRENT_GROUP_REGEX', SITELINK_REGEX.'\/torrents\.php\?(.*&)?id=(\d+)'); // id = group 4
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 define('TORRENT_GROUP_REGEX', SITELINK_REGEX.'\/torrents\.php\?(.*&)?id=(\d+)'); // id = group 4
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 define('ARTIST_REGEX', SITELINK_REGEX.'\/artist\.php\?(.*&)?id=(\d+)'); // id = group 4
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 define('ARTIST_REGEX', SITELINK_REGEX.'\/artist\.php\?(.*&)?id=(\d+)'); // id = group 4
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-define('DOI_REGEX', '10.\d{4,9}\/[-._;()\/:A-Z0-9]+'); # https://www.crossref.org/blog/dois-and-matching-regular-expressions/
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+
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+# https://www.crossref.org/blog/dois-and-matching-regular-expressions/
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+define('DOI_REGEX', '10.\d{4,9}\/[-._;()\/:A-Z0-9]+');
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+# https://www.biostars.org/p/13753/
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+define('ENTREZ_REGEX', '\d*');
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+# https://www.wikidata.org/wiki/Property:P496
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+define('ORCID_REGEX', '0000-000(1-[5-9]|2-[0-9]|3-[0-4])\d{3}-\d{3}[\dX]');
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+# https://www.biostars.org/p/13753/
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+define('REFSEQ_REGEX', '\w{2}_\d{1,}\.\d{1,}');
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+# https://www.uniprot.org/help/accession_numbers
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+define('UNIPROT_REGEX', '[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}');

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