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</li>
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<li id="r1.1.5"><a href="#h1.1"><strong>↑</strong></a> <a href="#r1.1.5">1.1.5.</a>
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- <strong>Archived files in uploads under 10 GiB are not allowed.</strong>
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+ <strong>Archived files in uploads under 5 GiB are not allowed.</strong>
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Specific archival rules can be found in their respective sections.
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</li>
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@@ -150,7 +150,7 @@ View::show_header('Uploading Rules', 'rules');
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<li id="r1.2.2"><a href="#h2.1"><strong>↑</strong></a> <a href="#r1.2.2">1.2.2.</a>
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<strong>Directories should have meaningful titles.</strong>
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"Title - Accession Number" or "Lab - Title."
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- The minimum acceptable is "Title", although it is preferable to include more information.
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+ The minimum acceptable is "Title," although it is preferable to include more information.
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Uploads that do not follow this rule are trumpable.
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</li>
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A torrent with unnecessary nested folders is trumpable by a torrent with such folders removed.
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For single-part torrents, all files must be included in the main torrent folder.
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For multi-part torrents, the main torrent folder may include sub-folders that hold the file contents for each of the parts.
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- Additional folders are unnecessary because they do nothing to improve the organization of the torrent.
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- If you are uncertain about what to do for other cases, PM a staff member for guidance.
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</li>
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<li id="r1.2.6"><a href="#h2.1"><strong>↑</strong></a> <a href="#r1.2.6">1.2.6.</a>
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<li id="r1.3.5"><a href="#h1.3"><strong>↑</strong></a> <a href="#r1.3.5">1.3.5.</a>
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<strong>Multi-part archives</strong>
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- for torrents under 50 GiB.
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+ for torrents under 10 GiB.
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</li>
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</ul>
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</div>
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<li id="r2.1.3"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.3">2.1.3.</a>
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<strong>Accession Number.</strong>
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- For nucleotide and amino acid sequences, ReqSeq database search and metadata autofill is in development.
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- You're encouraged to add an accession number whenever the <?= SITE_NAME ?> and NCBI data hashes match.
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+ For nucleotide, amino acid sequences or whatever number the source repository uses.
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+ RefSeq and UniProt integration is in development.
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+ You're encouraged to add an accession number whenever the <?= SITE_NAME ?> and repo data hashes match.
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</li>
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<li id="r2.1.4"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.4">2.1.4.</a>
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<li id="r2.1.6"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.6">2.1.6.</a>
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<strong>Strain/Variety.</strong>
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- The cultivar's name if known.
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+ The strain's name if known.
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</li>
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<li id="r2.1.7"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.7">2.1.7.</a>
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<strong>Authors(s).</strong>
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The upload form supports multiple authors per torrent.
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- Please limit yourself to perhaps the top three authors on the paper announcing the data release.
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- Do an author search before uploading so you get their names right.
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- ORCiD integration and author info populating is in development.
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+ Please limit yourself to the top four authors on the paper for the release.
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+ Do an author search before uploading to get their names right.
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+ ORCiD integration is in development.
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</li>
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<li id="r2.1.8"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.8">2.1.8.</a>
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<strong>Department/Lab.</strong>
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- This should correspond to the lab that did the experiments or the last author's home lab.
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+ The lab that did the experiments or the last author's home lab.
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Please use "Unaffiliated" for anonymous or unknown labs.
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<strong>Location.</strong>
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The lab's physical location as City, (State || Country) Postal Code.
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For example, Berkeley, CA 94720 or Berlin, Germany 10117.
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- Please use "Unknown" for anonymous or unknown labs.
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+ Please use "Unknown" if needed.
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<li id="r2.1.10"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.10">2.1.10.</a>
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<strong>Year.</strong>
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The year the data was first published.
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- It should correspond to the publication announcing the data.
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+ The publication that announced the data.
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<li id="r2.1.11"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.11">2.1.11.</a>
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<strong>Platform.</strong>
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- The class of technology this data comes from.
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+ The class of technology the data comes from.
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What sequencing or imaging technique is it the output of?
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- Please post in <a href="forums.php?action=viewforum&forumid=<?= SUGGESTIONS_FORUM_ID ?>">the suggestions forum</a>
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+ <a href="forums.php?action=viewforum&forumid=<?= SUGGESTIONS_FORUM_ID ?>">Please post in the suggestions forum</a>
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if you'd like to request a new platform.
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- Note that the available platforms change for the Imaging category.
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+ Note that the platforms change for the Imaging category.
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</li>
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<li id="r2.1.12"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.12">2.1.12.</a>
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<strong>Format.</strong>
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The file format of the data itself.
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What programs do you need to work with the data?
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- Please post in <a href="forums.php?action=viewforum&forumid=<?= SUGGESTIONS_FORUM_ID ?>">the suggestions forum</a>
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+ <a href="forums.php?action=viewforum&forumid=<?= SUGGESTIONS_FORUM_ID ?>">Please post in the suggestions forum</a>
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if you'd like to request a new format.
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- Note that the available formats change for the Imaging category.
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+ Note that the formats change for the Imaging category.
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</li>
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<li id="r2.1.13"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.13">2.1.13.</a>
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@@ -335,30 +334,30 @@ View::show_header('Uploading Rules', 'rules');
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<strong>License.</strong>
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<?= SITE_NAME ?> only allows permissive licenses.
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If your data is original, please consider licensing it under the available options.
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- The "Unknown" option is to be compatible with web releases.
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+ The "Unknown" option is for compatibility with existing web releases.
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<li id="r2.1.15"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.15">2.1.15.</a>
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<strong>Tags.</strong>
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Please select at least five appropriate tags.
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- Don't use irrelevant tags and consider making new tags a last resort.
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- Please post in <a href="forums.php?action=viewforum&forumid=<?= SUGGESTIONS_FORUM_ID ?>">the suggestions forum</a>
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+ Don't use irrelevant tags, and consider making new tags a last resort.
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+ <a href="forums.php?action=viewforum&forumid=<?= SUGGESTIONS_FORUM_ID ?>">Please post in the suggestions forum</a>
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if you'd like to request a new official tag.
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</li>
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<li id="r2.1.16"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.16">2.1.16.</a>
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<strong>Picture.</strong>
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Please upload a meaningful picture, especially if you plan to add the torrent to a collection.
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- This can be a photo of the specimen sequenced or a representative photo of the organism; a sample from an imaging dataset;
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+ A photo of the specimen sequenced or a representative photo of the organism; a sample from an imaging dataset;
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a screenshot of a useful table from the publication; or another similarly informative picture.
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</li>
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<li id="r2.1.17"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.17">2.1.17.</a>
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<strong>Publications.</strong>
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- Up to 10 publications may be uploaded to a group.
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- You technically shouldn't be able to upload more than that anyway.
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DOI numbers should be well-formed, one per line.
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The upload system currently discards malformed DOI numbers instead of extracting them from arbitrary strings.
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+ If your research is a URI, please use the Torrent Group Description field.
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+ 10 publication limit.
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<li id="r2.1.18"><a href="#h2.1"><strong>↑</strong></a> <a href="#r2.1.18">2.1.18.</a>
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